 |
MIxS |
Minimum Information about any Sequence |
Core standards of the GSC for describing genomes, metagenomes and gene marker sequences |
Pelin Yilmaz |
GSC 1, 2005 |
tbd |
 |
GCDML |
Genomic Contextual Data Markup Language |
An XML schema implementing MIxS |
Renzo Kottmann |
GSC 4, 2007 |
tbd |
 |
GRS |
Genomic Rosetta Stone |
Mapping of genomic identifiers across databases (to help unify descriptions from different electronic sources) |
Peter Dawyndt |
GSC 4, 2007 |
tbd |
 |
SIGS |
Standards in Genomic Sciences Journal |
The Open Access Journal of the Genomic Standards Consortium (GSC) |
George Garrity |
GSC 5, 2008 |
tbd |
 |
M5 |
Metagenomics, Metadata, MetaAnalysis, Models and MetaInfrastructure |
Bringing it all together in metagenomes – from data, to metadata to workflows to clouds |
Folker Meyer |
GSC 9, 2005 |
tbd |
 |
MEP |
Microbial Earth Project |
Megasequencing project covering all microbial type strains (~10.000 genomes) |
Nikos Kyrpides |
GSC 9, 2009 |
tbd |
 |
GBWG |
GSC Biodiversity Working Group |
Building intersections between the genomics and biodiversity communities – towards building the field of “Biodiversity Genomics” |
Bob Robbins |
GSC 9, 2009 |
tbd |
 |
MIxS-ers |
MIxS Compliance and Interoperability Working Group |
The engine of the GSC – developers and curators working together to implement MIxS |
James Cole |
GSC 10, 2010 |
tbd |
 |
Micro B3 |
Biodiversity, Bioinformatics and Biotechnology |
Marine Microbial Bioinformatics Platform development – generating and using GSC compliant data – including Ocean Sampling Day |
Frank Oliver Glöckner |
GSC 11, 2011 |
tbd |
 |
EnvO |
Environment Ontology |
An ontology to describe the environment (and samples taken from it) |
Pier Luigi Buttigieg |
GSC 14, 2012 |
tbd |
 |
MIxS-BE |
MIxS for indoor metagenomics |
A MIxS environmental package for describing the microbial community in built environments |
Lynn Schriml |
GSC 13, 2012 |
tbd |
 |
BIOM |
The Biological Observation Matrix (BIOM) format |
A uniform file format for capturing the sample by observation matrix-style data and metadata that is common in the -omics fields. |
Greg Caporaso |
GSC 13, 2011 |
tbd |
 |
GOs Network |
Genomic Observatories Network |
Building a global network of expert site with long-term highly contextualized genomic observations |
Neil Davies |
GSC 14, 2012 |
tbd |
 |
Biocode Commons |
Biocode Commons |
Building the informatics stack for the Genomic Observatories Network – from field to analysis to publication |
John Deck |
GSC 14, 2012 |
tbd |
 |
MIGO |
Minimum Information about a Genomic Observatory |
A specification for describing Genomic Observatories |
Neil Davies |
GSC 12, 2011 |
tbd |
 |
ISA |
ISA Infrastructure |
Next-generation data sharing software suite based on the ISA-file format – capable of handling multi-omic data.also available as a G-doc. |
Susanna Sansone |
2012 (2003) |
tbd |
 |
MIPS |
Minimum Information on a Phenotype MicroArray Study |
A minimum standard for recording and distributing PM data, which aid in improving genome annotation and testing metabolic hypotheses |
Hans-Peter Klenk |
GSC 15, 2013 |
tbd |
 |
MiBiG |
Minimum Information about a Biosynthetic Gene cluster |
Description of gene clusters encoding the biosynthesis of secondary metabolites.
|
Marnix Medema |
GSC 15, 2013 |
tbd |
 |
GCDJ |
Genomic Contextual Data JSON |
A JSON exchange format for Genomic Contextual Data |
Ivaylo Kostadinov |
GSC 17, 2015 |
tbd |
 |
MIxS-HCR |
MIxS for hydrocarbon resources |
A MIxS environmental package for describing the microbial community in hydrocarbon resources |
Nicolas Tsesmetzis |
GSC 17, 2015 |
tbd |
 |
GGBN Standard |
GGBN Data Standard Specification |
A set of terms and controlled vocabularies designed to represent tissue, DNA or RNA facts |
Gabi Droege |
GSC 18, 2016 |
tbd |