Genomic Standards Consortium

The Genomic Standards Consortium (GSC) is an open-membership working body formed in September 2005. The aim of the GSC is making genomic data discoverable. The GSC enables genomic data integration, discovery and comparison through international community-driven standards.

This project is maintained by GenomicsStandardsConsortium

Genomic Standards Consortium



MIxS

The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS)

MIxS currently consists of three separate checklists; MIGS for genomes, MIMS for metagenomes, and MIMARKS for marker genes.

To create a single entry point to all minimum information checklists from the GSC and to the environmental packages, we created an overarching framework, the MIxS standard (publication in Nature Biotechnology). MIxS includes the technology-specific checklists from the previous MIGS and MIMS standards, provides a way of introducing additional checklists such as MIMARKS, and also allows annotation of sample data using environmental packages.

The three checklists that are currently under MIxS share the same central set of core descriptors, but have checklist specific descriptors as well. Additionally, they enable a detailed description of environment through the use of optional environmental packages.

Environmental packages

The core MIxS team have developed a series environmental packages which expand on the basic set of mandatory terms to help flesh out metadata expectations for more specific environmental samples. These packages are described more on their individual pages.

A few important notes:

MIxS terms

Here we list all possible terms defined within the GSC MIxS checklists.

Below are links to pages with only the terms listed as Mandatory for each of the individual checklists: MIGS_EU etc…

Below are the Environmental package lists: air etc…